Functional Genomics

Functional Genomic
© 2008 Waksman Institute of Microbiology | Contact Webmaster
Site last published: 9/25/08 11:43 AM
functionalGenomicsppt



Supported by the NSF Plant Genome Program, we are in the process of constructing a transgenic transposon-tagging genetic resource to meet the functional genomics needs of the maize community. The resource is designed to mobilize a modified Ds element from different starting sites in the genome. We made 19 different constructs to test the activity of engineered Ds transposons, 16 based on pBS or pUC plasmids for use in biolistics experiments and 3 based on the pTF102 binary vector plasmid for use in Agrobacterium transformation experiments. The mutable alleles were engineered versions of either bz-m2 or c1-m2.


1. Biolistics
From 68 shooting experiments, we produced 271 independent transgenic events, regenerated over 1000 plants carrying the constructs, and tested transposon activity by crossing to appropriate Ac stocks. Of the 271 events, 74 transformants were somatically active. Only 1 of the 19 somatically active bz-m transformants produced Bz' germinal revertants, whereas 20 of the 55 somatically active c1-m transformants produced C1' germinal revertants (Fig. A above), which are potential sources of transposed Ds elements. The C' revertants were analyzed molecularly for the presence of trDs elements. Of 210 C' germinal revertants analyzed, 99 carried new trDs bands, a result consistent with the one-half fraction seen in other genetic screens based on transposon excision.

2. Agrobacterium
From 10 transformation experiments, we produced 46 independent transgenic events. Most c1-m transformants generated by Agrobacterium transformation show kernel spotting when crossed to c1 wx-m7(Ac) testers. The spotted phenotype resembles that of the native c1-m2 allele and segregates 1:1 (Fig. C above), suggesting integration of the transgene(s) at a single Mendelian locus. Southern Blot analysis confirmed the presence of 1 to 2 T-DNA copies per transgenic line. We are currently characterizing the T-DNA integration sites in the germinally active c1-m transformants.